Development Installation

• Add user to HiAER-Spike system and github repos, and CRISDSC user group on servers

• If using the HiAER-Spike system ensure default shell is set to bash .. code-block:: bash

  chsh -s /bin/bash

Install Pyenv

• Install Pyenv

  curl https://pyenv.run | bash
  

• Install python 3.10

  pyenv install 3.10
  

• Set python 3.10 as the global version before installing poetry

  pyenv global 3.10
  

Install Poetry

• Install Poetry

  curl -sSL https://install.python-poetry.org | python3 -
  

• Set Poetry to use local venv

  poetry config virtualenvs.in-project true
  

• Add shell extension for Poetry

  poetry self add poetry-plugin-shell
  

Install Libraries

• Install Fxpmath fork

  git clone git@github.com:Integrated-Systems-Neuroengineering/fxpmath.git
  cd fxpmath
  pyenv local 3.10
  poetry install
  

• Install connectome_utils

  git clone git@github.com:Integrated-Systems-Neuroengineering/connectome_utils.git
  cd connectome_utils
  git checkout dev
  pyenv local 3.10
  poetry install
  

• Install hs_bridge

  git clone git@github.com:Integrated-Systems-Neuroengineering/hs_bridge.git
  cd hs_bridge
  git checkout dev
  pyenv local 3.10
  poetry install
  

• Compile the cython components of hs_bridge

  poetry shell
  cd hs_bridge/wrapped_dma_dump
  make
  

• Install hs_api

  git clone git@github.com:Integrated-Systems-Neuroengineering/hs_api.git
  cd hs_api
  git checkout dev
  pyenv local 3.10
  poetry install